PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25469
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 348aa    MW: 39877.4 Da    PI: 9.1616
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25469genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12232278147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g WT++E+ l++++    G g Wk I++++   Rt  q+ s+ qky
         EMT25469 232 KGFWTPDEHRLFLHGLSICGRGKWKDISKHFVPSRTSTQISSHAQKY 278
                      688*****************************9*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.517227283IPR017930Myb domain
SuperFamilySSF466894.24E-16230284IPR009057Homeodomain-like
SMARTSM007171.5E-9231281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-11232278IPR009057Homeodomain-like
PfamPF002491.7E-9233278IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.8E-12234281IPR006447Myb domain, plants
CDDcd001677.72E-9235279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQPLPFLQSR ALCRLPLYRL TYRRALRSET AGLRNPPVGS LFLMVANDDK FPKDDRFPDI  60
DNLLGTLPFS YLYSCIQISI VIHSKEPQVC TMNPRVNQEW TPSEVEGARS IIDWLKNNYC  120
NDGTIYGINK KHEIVGTLQA WFPRKTMQQC LEKEYHGTNS DHGVNYTVDG HAHKNFWLQE  180
AAMQGTDFLF GCPLKSMQTM DTQQEVSMVE QNKVVLENRM RIHQPVLAPR AKGFWTPDEH  240
RLFLHGLSIC GRGKWKDISK HFVPSRTSTQ ISSHAQKYFM RLKSKGSGSQ RYRINDAELN  300
DANPWKMKST INSWQALAFQ STVGADNQNP SFDLQTLSSP FVTMNNIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM8BU220.0M8BU22_AEGTA; Myb-like protein J
STRINGMLOC_16598.11e-119(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.17e-18Homeodomain-like transcriptional regulator